Batch processing Batch processing of behavioral data ~ How to anlyze locations of individual animals
In behavioral studies, we want to analyze the locomotion. If we work on a single individual, we can easily obtain the po...
Batch processing Publication Motionless prey is invisible to predators
We visualized neuronal activity in the optic tectum of a zebrafish larva during prey perception. A moving paramecium evo...
Zebrafish ethogram zebrafish larvae as a model system for the study of cognitive functions
Zebrafish larvae capture a small object. This is a very interesting behavior because it consists of several neural proce...
ImageJ How to make a background image in the presence of the larva
Sometimes I need to put zebrafish larva in the recording chamber from the beginning of a recording and still want a back...
Image registration Image registration with TurboReg in ImageJ
During the time-lapse recording, the zebrafish larvae often make movements even in the agarose. Therefore, we need to r...
ImageJ How to make a graph of the calcium signals from multiple neurons using ImageJ (Fiji) and Excel
Here is what I would do to plot calcium signals from multiple neurons after time-lapse imaging. The brain images (GCaMP ...
未分類 NIG course for Zebrafish Imaging and Transgenesis 2015
NIG course for Zebrafish Imaging and Transgenesis was held at National Institute of Genetics (NIG) in Mishima, Japan dur...
Visual stimulus presentation A movie theater for zebrafish larvae under the microscope
There could be several ways to give visual stimuli to zebrafish. Using a LCD display, an OLED display, a projector, and ...
Visual stimulus presentation Making of a recording chamber: A TV theater for zebrafish larvae
At DAISO (a 100-yen shop / one-dollar shop), I found a small collection box (approx. 6 cm x 6 cm x 5 cm height) that ca...
Objective lenses 40x Water dipping objective lenses ~ How deep can you go?
I had an opportunity to use water dipping objective lenses from different manufacturers and was surprised to learn that ...
Publication Real-Time Visualization of Neuronal Activity during Perception (Current Biology 2013)
Neuronal Activity during Visual Perception 脳に映る視覚世界をリアルタイムで観察
Tectal responses during perception of a swimming para...
Bubble capture behavior Bubble capture behavioral assay
I recorded a single larva for a long time (three hours) for the first time to see how behavior changes over time. The be...